Publications List

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2022

  • Yap, S.H.K., Pan, J., Linh, D.V., Zhang, X., Wang, X., Teo, W.Z., Zamburg, E., Tham, C.K., Yew, W.S., Poh, C.L. and Thean, A.V.Y., 2022. Engineered Nucleotide Chemicapacitive Microsensor Array Augmented with Physics‐Guided Machine Learning for High‐Throughput Screening of Cannabidiol. Small, p.2107659.
  • Dao, V.L., Chan, S., Zhang, J., Ngo, R.K.J. and Poh, C.L., 2022. Single 3′-exonuclease-based multifragment DNA assembly method (SENAX). Scientific reports, 12(1), pp.1-15.
  • Chee, W.K.D., Yeoh, J.W., Dao, V.L. and Poh, C.L., 2022. Highly Reversible Tunable Thermal-Repressible Split-T7 RNA Polymerases (Thermal-T7RNAPs) for Dynamic Gene Regulation. ACS Synthetic Biology, 11(2), pp.921-937.
  • Chee, W.K.D., Yeoh, J.W., Dao, V.L. and Poh, C.L., 2022. Thermogenetics: Applications come of age. Biotechnology advances, p.107907.

2021

  • Wang, Y., Deng, L., Gunawan, E., Guan, Y.L., Shi, Z.P. and Poh, C.L., 2021. Concatenated Code Design for Constrained DNA Data Storage with Asymmetric Errors. arXiv preprint arXiv:2112.09417.
  • Lim, C.K., Nirantar, S., Yew, W.S. and Poh, C.L., 2021. Novel modalities in DNA data storage. Trends in Biotechnology, 39(10), pp.990-1003.
  • Mao, N., Aggarwal, N., Poh, C.L., Cho, B.K., Kondo, A., Liu, C., Yew, W.S. and Chang, M.W., 2021. Future trends in synthetic biology in Asia. Advanced Genetics, 2(1), p.e10038.
  • Dwijayanti, A., Zhang, C., Poh, C.L. and Lautier, T., 2021. Toward Multiplexed Optogenetic Circuits. Frontiers in Bioengineering and Biotechnology, 9.
  • Yixin, W., Rahim, M.N., Gunawan, E., Guan, Y.L. and Poh, C.L., 2021. Modelling, characterization of data-dependent and process-dependent errors in DNA data storage. bioRxiv.
  • Ngo, R.K.J., Yeoh, J.W., Fan, G.H.W., Loh, W.K.S. and Poh, C.L., 2021. BMSS2: a unified database-driven modelling tool for systematic model selection and identifiability analysis. bioRxiv.
  • Yeoh, J.W., Swainston, N., Vegh, P., Zulkower, V., Carbonell, P., Holowko, M.B., Peddinti, G. and Poh, C.L., 2021. SynBiopython: an open-source software library for Synthetic Biology.

2020

  • Brown, B., Bartley, B., Beal, J., Bird, J.E., Goñi-Moreno, Á., McLaughlin, J.A., Mısırlı, G., Roehner, N., Skelton, D.J., Poh, C.L. and Ofiteru, I.D., 2020. Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). ACS synthetic biology, 9(9), pp.2410-2417.
  • Wang, Y., Noor-A-Rahim, M., Gunawan, E., Guan, Y.L. and Poh, C.L., 2020, Thermodynamically Stable DNA Code Design using a Similarity Significance Model. In 2020 IEEE International Symposium on Information Theory (ISIT) (pp. 786-791). IEEE.
  • Chang, M.W., Lo, T.M.S. and Poh, C.L., Nanyang Technological University, 2020. Expression construct for sensing cell density and substrate availability and its use in conversion of hydroxycinnamic acids. U.S. Patent 10,683,521.
  • Yeoh, J. W., S/O Jayaraman, S., Tan, S. G. D., Jayaraman, P., Holowko, M. B., Zhang, J., Kang, C. W., Leo, H. L. & Poh, C. L. A Model-driven Approach towards Rational Microbial Bioprocess Optimization. (2020) Biotechnology and Bioengineering. DOI: 10.1002/bit.27571.
  • Zhang, J., Luo, Y., & Poh, C. L. Blue Light-Directed Cell Migration, Aggregation, and Patterning. (2020) Journal of Molecular Biology. DOI: 10.1016/j.jmb.2020.03.029
  • Mohan, H. K. S. V., Chee, W. K., Li, Y., Nayak, S., Poh, C. L., & Thean, A. V. Y. A highly sensitive graphene oxide based label-free capacitive aptasensor for vanillin detection. (2020) Materials & Design, 186, 108208. DOI: 10.1016/j.matdes.2019.108208.

2019

  • Yeoh, J.W., Gomez-Carretero, S., Chee, W.K.D., Teh, A.Y., Poh, C.L. Genetic Circuit Design Principles. (2019) In: Thouand G. (eds) Handbook of Cell Biosensors. Springer, Cham. DOI: 10.1007/978-3-319-47405-2_171-1
  • Wang, Y., Noor-A-Rahim, M., Zhang, J., Gunawan, E., Guan, Y. L., & Poh, C. L. High capacity DNA data storage with variable-length Oligonucleotides using repeat accumulate code and hybrid mapping. (2019) Journal of Biological Engineering, 13(1), 89. DOI: 10.1186/s13036-019-0211-2
  • Hillson, N., Caddick, M., Cai, Y., Carrasco, J.A., Chang, M.W., Curach, N.C., Bell, D.J., Le Feuvre, R., Friedman, D.C., Fu, X. and Gold, N.D., Building a global alliance of biofoundries (vol 10, 2040, 2019). Nature communications, 10. DOI: 10.1038/s41467-019-10862-1
  • Yeoh, J.W., Ng K.B.I., Teh A.Y., Zhang J., Chee W.K.D., & Poh C.L. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs. (2019) ACS synthetic biology, 8(7), 1484-1497. DOI: 10.1021/acssynbio.8b00523
  • Wang, Y., Noor-A-Rahim, M., Gunawan, E., Guan, Y.L. and Poh, C.L. Construction of bio-constrained code for DNA data storage. (2019) IEEE Communications Letters, 23(6), pp.963-966. DOI: 10.1109/LCOMM.2019.2912572

2018

  • Jayaraman, P., Yeoh, J.W., Zhang, J. and Poh, C.L., Programming the Dynamic Control of Bacterial Gene Expression with a Chimeric Ligand-and Light-Based Promoter System. (2018) ACS synthetic biology, 7(11), pp.2627-2639. DOI: 10.1021/acssynbio.8b00280
  • Zhang J., Poh C.L. Regulating exopolysaccharide gene wcaF allows control of Escherichia coli biofilm formation. (2018) Scientific Reports Vol. 8 DOI: 10.1038/s41598-018-31161-7
  • Jayaraman P., Yeoh J.W., Jayaraman S., Teh A.Y., Zhang J., Poh C.L. Cell-Free Optogenetic Gene Expression System. (2018) ACS Synthetic Biology Vol. 7 DOI: 10.1021/acssynbio.7b00422
  • Ravikumar R., Chen L.H., Jayaraman P., Poh C.L., Chan C.C. Chitosan-nickel film based interferometric optical fiber sensor for label-free detection of histidine tagged proteins. (2018) Biosensors and Bioelectronics Vol. 99 DOI: 10.1016/j.bios.2017.08.012

2017

  • Jayaraman P., Holowko M.B., Yeoh J.W., Lim S., Poh C.L. Repurposing a Two-Component System-Based Biosensor for the Killing of Vibrio cholerae. (2017) ACS Synthetic Biology Vol. 6 DOI: 10.1021/acssynbio.7b00058

2016

  • Holowko M.B., Wang H., Jayaraman P., Poh C.L. Biosensing Vibrio cholerae with Genetically Engineered Escherichia coli. (2016) ACS Synthetic Biology Vol. 5 DOI: 10.1021/acssynbio.6b00079
  • Jayaraman P., Devarajan K., Chua T.K., Zhang H., Gunawan E., Poh C.L. Blue light-mediated transcriptional activation and repression of gene expression in bacteria. (2016) Nucleic Acids Research Vol. 44 DOI: 10.1093/nar/gkw548

2015-2010

  • Yang Y., Wu Y., Hu Y., Cao Y., Poh C.L., Cao B., Song H. Engineering Electrode-Attached Microbial Consortia for High-Performance Xylose-Fed Microbial Fuel Cell. (2015) ACS Catalysis Vol. 5 DOI: 10.1021/acscatal.5b01733
  • Wong A., Wang H., Poh C.L., Kitney R.I. Layering genetic circuits to build a single cell, bacterial half adder. (2015) BMC Biology Vol. 13 DOI: 10.1186/s12915-015-0146-0
  • Ling M.H.T., Poh C.L. A predictor for predicting Escherichia coli transcriptome and the effects of gene perturbations. (2014) BMC Bioinformatics Vol. 15 DOI: 10.1186/1471-2105-15-140
  • Hwang I.Y., Tan M.H., Koh E., Ho C.L., Poh C.L., Chang M.W. Reprogramming microbes to be pathogen-Seeking killers. (2014) ACS Synthetic Biology Vol. 3 DOI: 10.1021/sb400077j
  • Wong C.K., Tan M.H., Rasouliha B.H., Hwang I.Y., Ling H., Poh C.L., Chang M.W. Therapeutic microbes for infectious disease. (2014) Methods in Molecular Biology Vol. 1151 DOI: 10.1007/978-1-4939-0554-6_9
  • Saeidi N., Arshath M., Chang M.W., Poh C.L. Characterization of a quorum sensing device for synthetic biology design: Experimental and modeling validation. (2013) Chemical Engineering Science Vol. 103 DOI: 10.1016/j.ces.2012.12.016
  • Chen L.H., Chan C.C., Menon R., Balamurali P., Wong W.C., Ang X.M., Hu P.B., Shaillender M., Neu B., Zu P., Tou Z.Q., Poh C.L., Leong K.C. Fabry-Perot fiber-optic immunosensor based on suspended layer-by-layer (chitosan/polystyrene sulfonate) membrane. (2013) Sensors and Actuators, B: Chemical Vol. 188 DOI: 10.1016/j.snb.2013.06.093
  • Saeidi N., Wong C.K., Lo T.-M., Nguyen H.X., Ling H., Leong S.S.J., Poh C.L., Chang M.W. Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen. (2011) Molecular Systems Biology Vol. 7 DOI: 10.1038/msb.2011.55
  • Chan C.C., Ni N., Sun J., Chua Y.C., Tanga Y., Poh C.L. Interferometric noise suppression in fiber Bragg grating sensors by using wavelet filter. (2010) Journal of Optoelectronics and Advanced Materials Vol. 12
  • Sana B., Johnson E., Sheah K., Poh C.L., Lim S. Iron-based ferritin nanocore as a contrast agent. (2010) Biointerphases Vol. 5
  • Yap, S.H.K., Pan, J., Linh, D.V., Zhang, X., Wang, X., Teo, W.Z., Zamburg, E., Tham, C.K., Yew, W.S., Poh, C.L. and Thean, A.V.Y., 2022. Engineered Nucleotide Chemicapacitive Microsensor Array Augmented with Physics‐Guided Machine Learning for High‐Throughput Screening of Cannabidiol. Small, p.2107659.
  • Dao, V.L., Chan, S., Zhang, J., Ngo, R.K.J. and Poh, C.L., 2022. Single 3′-exonuclease-based multifragment DNA assembly method (SENAX). Scientific reports, 12(1), pp.1-15.
  • Chee, W.K.D., Yeoh, J.W., Dao, V.L. and Poh, C.L., 2022. Highly Reversible Tunable Thermal-Repressible Split-T7 RNA Polymerases (Thermal-T7RNAPs) for Dynamic Gene Regulation. ACS Synthetic Biology, 11(2), pp.921-937.
  • Chee, W.K.D., Yeoh, J.W., Dao, V.L. and Poh, C.L., 2022. Thermogenetics: Applications come of age. Biotechnology advances, p.107907.
  • Wang, Y., Deng, L., Gunawan, E., Guan, Y.L., Shi, Z.P. and Poh, C.L., 2021. Concatenated Code Design for Constrained DNA Data Storage with Asymmetric Errors. arXiv preprint arXiv:2112.09417.
  • Lim, C.K., Nirantar, S., Yew, W.S. and Poh, C.L., 2021. Novel modalities in DNA data storage. Trends in Biotechnology, 39(10), pp.990-1003.
  • Mao, N., Aggarwal, N., Poh, C.L., Cho, B.K., Kondo, A., Liu, C., Yew, W.S. and Chang, M.W., 2021. Future trends in synthetic biology in Asia. Advanced Genetics, 2(1), p.e10038.
  • Dwijayanti, A., Zhang, C., Poh, C.L. and Lautier, T., 2021. Toward Multiplexed Optogenetic Circuits. Frontiers in Bioengineering and Biotechnology, 9.
  • Yixin, W., Rahim, M.N., Gunawan, E., Guan, Y.L. and Poh, C.L., 2021. Modelling, characterization of data-dependent and process-dependent errors in DNA data storage. bioRxiv.
  • Ngo, R.K.J., Yeoh, J.W., Fan, G.H.W., Loh, W.K.S. and Poh, C.L., 2021. BMSS2: a unified database-driven modelling tool for systematic model selection and identifiability analysis. bioRxiv.
  • Yeoh, J.W., Swainston, N., Vegh, P., Zulkower, V., Carbonell, P., Holowko, M.B., Peddinti, G. and Poh, C.L., 2021. SynBiopython: an open-source software library for Synthetic Biology.
  • Brown, B., Bartley, B., Beal, J., Bird, J.E., Goñi-Moreno, Á., McLaughlin, J.A., Mısırlı, G., Roehner, N., Skelton, D.J., Poh, C.L. and Ofiteru, I.D., 2020. Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL). ACS synthetic biology, 9(9), pp.2410-2417.
  • Wang, Y., Noor-A-Rahim, M., Gunawan, E., Guan, Y.L. and Poh, C.L., 2020, Thermodynamically Stable DNA Code Design using a Similarity Significance Model. In 2020 IEEE International Symposium on Information Theory (ISIT) (pp. 786-791). IEEE.
  • Chang, M.W., Lo, T.M.S. and Poh, C.L., Nanyang Technological University, 2020. Expression construct for sensing cell density and substrate availability and its use in conversion of hydroxycinnamic acids. U.S. Patent 10,683,521.
  • Yeoh, J. W., S/O Jayaraman, S., Tan, S. G. D., Jayaraman, P., Holowko, M. B., Zhang, J., Kang, C. W., Leo, H. L. & Poh, C. L. A Model-driven Approach towards Rational Microbial Bioprocess Optimization. (2020) Biotechnology and Bioengineering. DOI: 10.1002/bit.27571.
  • Zhang, J., Luo, Y., & Poh, C. L. Blue Light-Directed Cell Migration, Aggregation, and Patterning. (2020) Journal of Molecular Biology. DOI: 10.1016/j.jmb.2020.03.029
  • Mohan, H. K. S. V., Chee, W. K., Li, Y., Nayak, S., Poh, C. L., & Thean, A. V. Y. A highly sensitive graphene oxide based label-free capacitive aptasensor for vanillin detection. (2020) Materials & Design, 186, 108208. DOI: 10.1016/j.matdes.2019.108208.
  • Yeoh, J.W., Gomez-Carretero, S., Chee, W.K.D., Teh, A.Y., Poh, C.L. Genetic Circuit Design Principles. (2019) In: Thouand G. (eds) Handbook of Cell Biosensors. Springer, Cham. DOI: 10.1007/978-3-319-47405-2_171-1
  • Wang, Y., Noor-A-Rahim, M., Zhang, J., Gunawan, E., Guan, Y. L., & Poh, C. L. High capacity DNA data storage with variable-length Oligonucleotides using repeat accumulate code and hybrid mapping. (2019) Journal of Biological Engineering, 13(1), 89. DOI: 10.1186/s13036-019-0211-2
  • Hillson, N., Caddick, M., Cai, Y., Carrasco, J.A., Chang, M.W., Curach, N.C., Bell, D.J., Le Feuvre, R., Friedman, D.C., Fu, X. and Gold, N.D., Building a global alliance of biofoundries (vol 10, 2040, 2019). Nature communications, 10. DOI: 10.1038/s41467-019-10862-1
  • Yeoh, J.W., Ng K.B.I., Teh A.Y., Zhang J., Chee W.K.D., & Poh C.L. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs. (2019) ACS synthetic biology, 8(7), 1484-1497. DOI: 10.1021/acssynbio.8b00523
  • Wang, Y., Noor-A-Rahim, M., Gunawan, E., Guan, Y.L. and Poh, C.L. Construction of bio-constrained code for DNA data storage. (2019) IEEE Communications Letters, 23(6), pp.963-966. DOI: 10.1109/LCOMM.2019.2912572
  • Jayaraman, P., Yeoh, J.W., Zhang, J. and Poh, C.L., Programming the Dynamic Control of Bacterial Gene Expression with a Chimeric Ligand-and Light-Based Promoter System. (2018) ACS synthetic biology, 7(11), pp.2627-2639. DOI: 10.1021/acssynbio.8b00280
  • Zhang J., Poh C.L. Regulating exopolysaccharide gene wcaF allows control of Escherichia coli biofilm formation. (2018) Scientific Reports Vol. 8 DOI: 10.1038/s41598-018-31161-7
  • Jayaraman P., Yeoh J.W., Jayaraman S., Teh A.Y., Zhang J., Poh C.L. Cell-Free Optogenetic Gene Expression System. (2018) ACS Synthetic Biology Vol. 7 DOI: 10.1021/acssynbio.7b00422
  • Ravikumar R., Chen L.H., Jayaraman P., Poh C.L., Chan C.C. Chitosan-nickel film based interferometric optical fiber sensor for label-free detection of histidine tagged proteins. (2018) Biosensors and Bioelectronics Vol. 99 DOI: 10.1016/j.bios.2017.08.012
  • Jayaraman P., Holowko M.B., Yeoh J.W., Lim S., Poh C.L. Repurposing a Two-Component System-Based Biosensor for the Killing of Vibrio cholerae. (2017) ACS Synthetic Biology Vol. 6 DOI: 10.1021/acssynbio.7b00058
  • Holowko M.B., Wang H., Jayaraman P., Poh C.L. Biosensing Vibrio cholerae with Genetically Engineered Escherichia coli. (2016) ACS Synthetic Biology Vol. 5 DOI: 10.1021/acssynbio.6b00079
  • Jayaraman P., Devarajan K., Chua T.K., Zhang H., Gunawan E., Poh C.L. Blue light-mediated transcriptional activation and repression of gene expression in bacteria. (2016) Nucleic Acids Research Vol. 44 DOI: 10.1093/nar/gkw548
  • Yang Y., Wu Y., Hu Y., Cao Y., Poh C.L., Cao B., Song H. Engineering Electrode-Attached Microbial Consortia for High-Performance Xylose-Fed Microbial Fuel Cell. (2015) ACS Catalysis Vol. 5 DOI: 10.1021/acscatal.5b01733
  • Wong A., Wang H., Poh C.L., Kitney R.I. Layering genetic circuits to build a single cell, bacterial half adder. (2015) BMC Biology Vol. 13 DOI: 10.1186/s12915-015-0146-0
  • Ling M.H.T., Poh C.L. A predictor for predicting Escherichia coli transcriptome and the effects of gene perturbations. (2014) BMC Bioinformatics Vol. 15 DOI: 10.1186/1471-2105-15-140
  • Hwang I.Y., Tan M.H., Koh E., Ho C.L., Poh C.L., Chang M.W. Reprogramming microbes to be pathogen-Seeking killers. (2014) ACS Synthetic Biology Vol. 3 DOI: 10.1021/sb400077j
  • Wong C.K., Tan M.H., Rasouliha B.H., Hwang I.Y., Ling H., Poh C.L., Chang M.W. Therapeutic microbes for infectious disease. (2014) Methods in Molecular Biology Vol. 1151 DOI: 10.1007/978-1-4939-0554-6_9
  • Saeidi N., Arshath M., Chang M.W., Poh C.L. Characterization of a quorum sensing device for synthetic biology design: Experimental and modeling validation. (2013) Chemical Engineering Science Vol. 103 DOI: 10.1016/j.ces.2012.12.016
  • Chen L.H., Chan C.C., Menon R., Balamurali P., Wong W.C., Ang X.M., Hu P.B., Shaillender M., Neu B., Zu P., Tou Z.Q., Poh C.L., Leong K.C. Fabry-Perot fiber-optic immunosensor based on suspended layer-by-layer (chitosan/polystyrene sulfonate) membrane. (2013) Sensors and Actuators, B: Chemical Vol. 188 DOI: 10.1016/j.snb.2013.06.093
  • Saeidi N., Wong C.K., Lo T.-M., Nguyen H.X., Ling H., Leong S.S.J., Poh C.L., Chang M.W. Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen. (2011) Molecular Systems Biology Vol. 7 DOI: 10.1038/msb.2011.55
  • Chan C.C., Ni N., Sun J., Chua Y.C., Tanga Y., Poh C.L. Interferometric noise suppression in fiber Bragg grating sensors by using wavelet filter. (2010) Journal of Optoelectronics and Advanced Materials Vol. 12
  • Sana B., Johnson E., Sheah K., Poh C.L., Lim S. Iron-based ferritin nanocore as a contrast agent. (2010) Biointerphases Vol. 5